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  5. Brara.H00475.1

Brara.H00475.1


Description : serine hydroxymethyltransferase *(SHM) & EC_2.1 transferase transferring one-carbon group


Gene families : OG_42_0000626 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00475.1
Cluster HCAA Clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
A4A49_25960 No alias serine hydroxymethyltransferase, mitochondrial 0.03 Orthogroups_2024-Update
At4g13890 No alias Serine hydroxymethyltransferase 5... 0.03 Orthogroups_2024-Update
At4g32520 No alias Serine hydroxymethyltransferase 3, chloroplastic... 0.04 Orthogroups_2024-Update
Bradi4g08097 No alias serine hydroxymethyltransferase 4 0.03 Orthogroups_2024-Update
Brara.A00543.1 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 Orthogroups_2024-Update
LOC_Os05g35440 No alias serine hydroxymethyltransferase, mitochondrial... 0.03 Orthogroups_2024-Update
MA_730617g0010 No alias (at4g32520 : 720.0) Encodes a serine... 0.03 Orthogroups_2024-Update
Mp2g07660.1 No alias serine hydroxymethyltransferase 0.02 Orthogroups_2024-Update
Potri.002G109200 No alias serine hydroxymethyltransferase 2 0.03 Orthogroups_2024-Update
Sobic.005G113300.1 No alias serine hydroxymethyltransferase *(SHM) & EC_2.1... 0.03 Orthogroups_2024-Update
Solyc12g098490 No alias Serine hydroxymethyltransferase (AHRD V3.3 *** M1A0B7_SOLTU) 0.03 Orthogroups_2024-Update
evm.model.tig00000144.148 No alias (p34899|glym_pea : 382.0) Serine... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 13 411
No external refs found!