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  5. Brara.H00482.1

Brara.H00482.1


Description : RNA editing factor *(ORRM3)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00482.1
Cluster HCAA Clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
81392 No alias glycine-rich RNA-binding protein 3 0.04 Orthogroups_2024-Update
At3g26420 No alias Glycine-rich RNA-binding protein RZ1A... 0.03 Orthogroups_2024-Update
Bradi4g06840 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
GRMZM2G003897 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
GRMZM2G131167 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
GRMZM2G165901 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Glyma.04G012700 No alias cold, circadian rhythm, and rna binding 2 0.03 Orthogroups_2024-Update
Glyma.16G217600 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.18G266500 No alias glycine-rich RNA-binding protein 3 0.05 Orthogroups_2024-Update
Mp1g21200.1 No alias RNA editing factor (ORRM) 0.05 Orthogroups_2024-Update
Potri.001G319800 No alias glycine-rich RNA-binding protein 2 0.06 Orthogroups_2024-Update
Potri.001G319900 No alias glycine-rich RNA-binding protein 2 0.09 Orthogroups_2024-Update
Potri.017G059000 No alias glycine-rich RNA-binding protein 2 0.07 Orthogroups_2024-Update
Pp1s143_11V6 No alias glycine-rich rna-binding 0.03 Orthogroups_2024-Update
Pp1s45_280V6 No alias glycine-rich rna-binding 0.04 Orthogroups_2024-Update
Seita.2G381300.1 No alias RNA editing factor *(ORRM3) 0.1 Orthogroups_2024-Update
Seita.3G357800.1 No alias RNA editing factor *(ORRM3) 0.08 Orthogroups_2024-Update
Seita.5G427300.1 No alias RNA editing factor *(ORRM3) 0.05 Orthogroups_2024-Update
Sobic.001G136500.1 No alias RNA chaperone *(RZ1) 0.02 Orthogroups_2024-Update
Sobic.001G141300.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.002G366800.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Sobic.003G401400.1 No alias RNA editing factor *(ORRM3) 0.06 Orthogroups_2024-Update
Sobic.008G103900.1 No alias RNA editing factor *(ORRM3) 0.12 Orthogroups_2024-Update
Solyc05g053780 No alias RNA binding protein-like protein (AHRD V3.3 *** Q3HVL3_SOLTU) 0.03 Orthogroups_2024-Update
Solyc07g063900 No alias RNA binding protein, putative (AHRD V3.3 *-* B9SY46_RICCO) 0.03 Orthogroups_2024-Update
Solyc09g092320 No alias RNA binding protein (AHRD V3.3 *** O23793_NICSY) 0.04 Orthogroups_2024-Update
Solyc10g081180 No alias RNA-binding protein (AHRD V3.3 *-* Q941H9_TOBAC) 0.15 Orthogroups_2024-Update
Solyc10g084630 No alias RNA-binding family protein (AHRD V3.3 *** A0A061ET74_THECC) 0.04 Orthogroups_2024-Update
Sopen05g032250 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update
Sopen09g035220 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.04 Orthogroups_2024-Update
Sopen10g031680 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
evm.model.tig00000826.12 No alias (at3g23830 : 98.2) encodes a glycine-rich RNA binding... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044445 cytosolic part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090730 Las1 complex IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 71 141
No external refs found!