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  5. Brara.H00517.1

Brara.H00517.1


Description : Unknown function


Gene families : OG_42_0001935 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001935_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00517.1
Cluster HCAA Clusters: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
85365 No alias Serinc-domain containing serine and sphingolipid... 0.02 Orthogroups_2024-Update
Bradi2g05070 No alias Serinc-domain containing serine and sphingolipid... 0.02 Orthogroups_2024-Update
Brara.G00625.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.20G078900 No alias Serinc-domain containing serine and sphingolipid... 0.04 Orthogroups_2024-Update
Kfl00013_0410 kfl00013_0410_v1.1 (at4g13345 : 335.0) maternal effect embryo arrest 55... 0.02 Orthogroups_2024-Update
LOC_Os01g08460 No alias TMS membrane protein/tumour differentially expressed... 0.02 Orthogroups_2024-Update
Sopen09g034170 No alias Serine incorporator (Serinc) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
MF GO:0016972 thiol oxidase activity IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
InterPro domains Description Start Stop
IPR005016 TDE1/TMS 311 391
IPR005016 TDE1/TMS 29 313
No external refs found!