Brara.H00536.1

Description : ligand-gated cation channel *(GLR)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.H00536.1
Cluster	HCAA Clusters: Cluster_207

Target	Alias	Description	ECC score	Gene Family Method
A4A49_28967	No alias	glutamate receptor 2.8	0.04	Orthogroups_2024-Update
A4A49_28968	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
At1g42540	No alias	Glutamate receptor 3.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E7]	0.03	Orthogroups_2024-Update
At2g29100	No alias	Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:A0A178VR79]	0.04	Orthogroups_2024-Update
At2g29120	No alias	Glutamate receptor 2.7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGN0]	0.02	Orthogroups_2024-Update
Bradi4g30840	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Brara.F03008.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Brara.I03484.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Brara.J00340.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
GRMZM2G098301	No alias	glutamate receptor 3.3	0.01	Orthogroups_2024-Update
Glyma.07G226400	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
Glyma.13G172100	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Glyma.13G233400	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Glyma.13G272400	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
HORVU2Hr1G064530.8	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
HORVU5Hr1G063440.16	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
MA_9224859g0010	No alias	(at4g35290 : 187.0) Encodes a putative glutamate...	0.03	Orthogroups_2024-Update
Potri.004G052400	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Potri.005G102700	No alias	glutamate receptor 3.6	0.03	Orthogroups_2024-Update
Seita.1G009400.1	No alias	ligand-gated cation channel *(GLR)	0.01	Orthogroups_2024-Update
Seita.2G335400.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Seita.4G260500.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.004G324000.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.010G231500.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Sopen05g026960	No alias	Receptor family ligand binding region	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	16Dec
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0003333	amino acid transmembrane transport	IEP	Predicted GO
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	Predicted GO
MF	GO:0004506	squalene monooxygenase activity	IEP	Predicted GO
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Predicted GO
BP	GO:0006865	amino acid transport	IEP	Predicted GO
CC	GO:0009507	chloroplast	IEP	Predicted GO
CC	GO:0009536	plastid	IEP	Predicted GO
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015994	chlorophyll metabolic process	IEP	Predicted GO
BP	GO:0015996	chlorophyll catabolic process	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO
MF	GO:0016832	aldehyde-lyase activity	IEP	Predicted GO
BP	GO:0019321	pentose metabolic process	IEP	Predicted GO
BP	GO:0019439	aromatic compound catabolic process	IEP	Predicted GO
BP	GO:0019566	arabinose metabolic process	IEP	Predicted GO
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Predicted GO
BP	GO:0034220	ion transmembrane transport	IEP	Predicted GO
BP	GO:0042440	pigment metabolic process	IEP	Predicted GO
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Predicted GO
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Predicted GO
BP	GO:0046149	pigment catabolic process	IEP	Predicted GO
BP	GO:0046373	L-arabinose metabolic process	IEP	Predicted GO
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Predicted GO
BP	GO:0046700	heterocycle catabolic process	IEP	Predicted GO
MF	GO:0047746	chlorophyllase activity	IEP	Predicted GO
BP	GO:0051187	cofactor catabolic process	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:0071805	potassium ion transmembrane transport	IEP	Predicted GO
BP	GO:0098656	anion transmembrane transport	IEP	Predicted GO
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Predicted GO
BP	GO:1903825	organic acid transmembrane transport	IEP	Predicted GO
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001828	ANF_lig-bd_rcpt	47	404
IPR001638	Solute-binding_3/MltF_N	481	804
IPR001320	Iontro_rcpt	805	837

External Links

No external refs found!

Brara.H00536.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation