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  5. Brara.H00659.1

Brara.H00659.1


Description : component *(MBD2) of histone deacetylation complex & methylation reader *(MBD1-4/12)


Gene families : OG_42_0001412 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001412_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00659.1
Cluster HCAA Clusters: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G061190.1 No alias component *(MBD1/4) of histone deacetylation complex &... 0.03 Orthogroups_2024-Update
Kfl00002_0070 kfl00002_0070_v1.1 (at5g35330 : 113.0) Protein containing... 0.02 Orthogroups_2024-Update
LOC_Os09g32090 No alias methyl-binding domain protein MBD, putative, expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
MF GO:0019107 myristoyltransferase activity IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 131 194
IPR011124 Znf_CW 65 116
No external refs found!