1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.H00693.1

Brara.H00693.1


Description : RNA editing factor *(MEF35)


Gene families : OG_42_0009458 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009458_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00693.1
Cluster HCAA Clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G064420.7 No alias RNA editing factor *(MEF35) 0.05 Orthogroups_2024-Update
PSME_00034108-RA No alias (at4g14050 : 588.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.001G321700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.009G140400.1 No alias RNA editing factor *(MEF35) 0.02 Orthogroups_2024-Update
Sopen09g035340 No alias PPR repeat 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 375 398
IPR002885 Pentatricopeptide_repeat 169 195
IPR002885 Pentatricopeptide_repeat 42 67
IPR002885 Pentatricopeptide_repeat 200 229
IPR002885 Pentatricopeptide_repeat 299 347
IPR032867 DYW_dom 517 609
No external refs found!