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  5. Brara.H00716.1

Brara.H00716.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00716.1
Cluster HCAA Clusters: Cluster_365

Target Alias Description ECC score Gene Family Method Actions
101093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
31963 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
A4A49_00959 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
AC204292.4_FG002 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At1g13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.04 Orthogroups_2024-Update
Bradi2g53450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g57140 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g36470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A01167.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
GRMZM2G020008 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
GRMZM2G030148 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G085089 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G098869 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G158839 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G176523 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G474929 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
Glyma.08G213800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G035600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os08g33700 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_230261g0010 No alias (at4g13650 : 756.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_656915g0010 No alias (at4g18750 : 657.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00001133-RA No alias (at2g03880 : 550.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00013106-RA No alias (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00017531-RA No alias (at1g11290 : 661.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00025402-RA No alias (at3g02010 : 629.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00030185-RA No alias (at3g57430 : 680.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
PSME_00036639-RA No alias (at1g11290 : 691.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00042206-RA No alias (at1g11290 : 595.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Potri.003G088600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Potri.003G223900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G012600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G080200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G053500 No alias mitochondrial RNAediting factor 1 0.02 Orthogroups_2024-Update
Seita.2G047600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G168200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G489500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G548100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G182501.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.009G079400.1 No alias RNA editing factor *(ECD1) 0.02 Orthogroups_2024-Update
Solyc07g008480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc08g076150 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc12g096510 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen01g036300 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen03g033730 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen07g001950 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 110 158
IPR002885 Pentatricopeptide_repeat 345 391
IPR002885 Pentatricopeptide_repeat 243 291
IPR002885 Pentatricopeptide_repeat 408 439
IPR002885 Pentatricopeptide_repeat 187 214
IPR002885 Pentatricopeptide_repeat 319 344
IPR002885 Pentatricopeptide_repeat 216 238
No external refs found!