1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.H00717.1

Brara.H00717.1


Description : component *(MED34) of MEDIATOR transcription co-activator complex


Gene families : OG_42_0000769 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00717.1
Cluster HCAA Clusters: Cluster_341

Target Alias Description ECC score Gene Family Method Actions
At3g05740 No alias ATP-dependent DNA helicase Q-like 1... 0.05 Orthogroups_2024-Update
Cre12.g490150 No alias RECQ helicase SIM 0.02 Orthogroups_2024-Update
GRMZM2G451856 No alias RECQ helicase L2 0.03 Orthogroups_2024-Update
LOC_Os04g35420 No alias helicase conserved C-terminal domain containing protein,... 0.02 Orthogroups_2024-Update
Mp4g16510.1 No alias ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.03 Orthogroups_2024-Update
Seita.8G229300.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006260 DNA replication IEA 16Dec
BP GO:0006281 DNA repair IEA 16Dec
MF GO:0043138 3'-5' DNA helicase activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032284 RecQ_Zn-bd 422 478
IPR001650 Helicase_C 304 409
IPR018982 RQC_domain 484 586
IPR011545 DEAD/DEAH_box_helicase_dom 94 262
IPR002121 HRDC_dom 602 662
No external refs found!