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  5. Brara.H01136.1

Brara.H01136.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H01136.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
A4A49_18989 No alias agamous-like mads-box protein agl19 0.03 Orthogroups_2024-Update
A4A49_26362 No alias floral homeotic protein globosa 0.03 Orthogroups_2024-Update
At2g45650 No alias AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3] 0.03 Orthogroups_2024-Update
Bradi2g43290 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Bradi3g41260 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.A01539.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.C01460.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G018499 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
GRMZM2G148693 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
GRMZM2G171365 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Glyma.02G185500 No alias AGAMOUS-like 18 0.04 Orthogroups_2024-Update
Glyma.09G283800 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.13G034100 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Glyma.18G273600 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
HORVU1Hr1G008300.3 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
HORVU3Hr1G026650.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
HORVU6Hr1G066140.9 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
LOC_Os03g03070 No alias transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g41960 No alias OsMADS37 - MADS-box family gene with MIKC* type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g21880 No alias OsMADS74 - MADS-box family gene with M-alpha type-box, expressed 0.03 Orthogroups_2024-Update
MA_35712g0010 No alias (at4g11880 : 102.0) AGL12, AGL14, and AGL17 are all... 0.03 Orthogroups_2024-Update
Potri.001G058400 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Seita.5G036500.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G027000.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G406800.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.007G192900.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.009G102200.2 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Solyc01g087990 No alias MADS-box transcription factor AGAMOUS-like protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc01g092950 No alias MADS-box transcription factor (AHRD V3.3 *** A0A072TQ92_MEDTR) 0.03 Orthogroups_2024-Update
Solyc06g069430 No alias FRUITFULL-like MADS-box 1 0.03 Orthogroups_2024-Update
evm.model.contig_454.6 No alias (at3g57230 : 92.4) MADS-box transcription factor.... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002487 TF_Kbox 84 170
IPR002100 TF_MADSbox 10 57
No external refs found!