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  5. Brara.H01188.1

Brara.H01188.1


Description : component *(eS1) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H01188.1
Cluster HCAA Clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
271906 No alias Ribosomal protein S3Ae 0.08 Orthogroups_2024-Update
271907 No alias Ribosomal protein S3Ae 0.04 Orthogroups_2024-Update
A4A49_56002 No alias 40s ribosomal protein s3a 0.1 Orthogroups_2024-Update
At3g04840 No alias 40S ribosomal protein S3a-1... 0.03 Orthogroups_2024-Update
Bradi1g71200 No alias Ribosomal protein S3Ae 0.11 Orthogroups_2024-Update
Bradi1g78170 No alias Ribosomal protein S3Ae 0.16 Orthogroups_2024-Update
Bradi3g01210 No alias Ribosomal protein S3Ae 0.14 Orthogroups_2024-Update
Brara.C03077.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.K00335.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre13.g568650 No alias Ribosomal protein S3Ae 0.14 Orthogroups_2024-Update
GRMZM2G145258 No alias Ribosomal protein S3Ae 0.08 Orthogroups_2024-Update
Glyma.01G236600 No alias Ribosomal protein S3Ae 0.04 Orthogroups_2024-Update
Glyma.10G245200 No alias Ribosomal protein S3Ae 0.07 Orthogroups_2024-Update
Glyma.11G006600 No alias Ribosomal protein S3Ae 0.12 Orthogroups_2024-Update
HORVU1Hr1G032060.4 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
HORVU4Hr1G070370.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
LOC_Os03g10340 No alias 40S ribosomal protein S3a, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g21798 No alias 40S ribosomal protein S3a, putative, expressed 0.04 Orthogroups_2024-Update
MA_31004g0010 No alias (at4g34670 : 389.0) Ribosomal protein S3Ae; FUNCTIONS... 0.05 Orthogroups_2024-Update
PSME_00005371-RA No alias (at4g34670 : 408.0) Ribosomal protein S3Ae; FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.008G156300 No alias Ribosomal protein S3Ae 0.06 Orthogroups_2024-Update
Potri.010G083200 No alias Ribosomal protein S3Ae 0.07 Orthogroups_2024-Update
Pp1s179_15V6 No alias 40s ribosomal protein s3a 0.12 Orthogroups_2024-Update
Pp1s17_306V6 No alias 40s ribosomal protein s3a 0.08 Orthogroups_2024-Update
Pp1s219_50V6 No alias 40s ribosomal protein s3a 0.13 Orthogroups_2024-Update
Pp1s80_113V6 No alias 40s ribosomal protein s3a 0.04 Orthogroups_2024-Update
Pp1s92_47V6 No alias 40s ribosomal protein s3a 0.03 Orthogroups_2024-Update
Seita.2G378300.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
Seita.9G502500.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Sobic.001G431400.2 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.001G467300.3 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Sobic.002G364100.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Sobic.002G364500.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Solyc03g097900 No alias 40S ribosomal protein S3a (AHRD V3.3 *** RS3A_TOBAC) 0.03 Orthogroups_2024-Update
Solyc06g072490 No alias 40S ribosomal protein S3a (AHRD V3.3 *** RS3A_TOBAC) 0.15 Orthogroups_2024-Update
Solyc09g082520 No alias 40S ribosomal protein S3a (AHRD V3.3 *** K4CVM9_SOLLC) 0.08 Orthogroups_2024-Update
Sopen06g028860 No alias Ribosomal S3Ae family 0.17 Orthogroups_2024-Update
Sopen09g031380 No alias Ribosomal S3Ae family 0.05 Orthogroups_2024-Update
evm.model.contig_2340.2 No alias (p49397|rs3a_orysa : 304.0) 40S ribosomal protein S3a... 0.19 Orthogroups_2024-Update
evm.model.tig00020710.39 No alias (at4g34670 : 313.0) Ribosomal protein S3Ae; FUNCTIONS... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 16 221
No external refs found!