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Description : RING-H2-class ATL-subclass E3 ubiquitin ligase
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.H01260.1 | |
| Cluster | HCAA Clusters: Cluster_195 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 423895 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| A4A49_30300 | No alias | ring-h2 finger protein atl54 | 0.04 | Orthogroups_2024-Update | |
| At1g49200 | No alias | RING-H2 finger protein ATL75... | 0.03 | Orthogroups_2024-Update | |
| At4g35480 | No alias | RHA3B [Source:UniProtKB/TrEMBL;Acc:A0A178UXS9] | 0.03 | Orthogroups_2024-Update | |
| At5g01880 | No alias | RING-H2 finger protein ATL74... | 0.03 | Orthogroups_2024-Update | |
| At5g17600 | No alias | RING-H2 finger protein ATL52... | 0.04 | Orthogroups_2024-Update | |
| At5g47610 | No alias | At5g47610 [Source:UniProtKB/TrEMBL;Acc:Q1H5E6] | 0.03 | Orthogroups_2024-Update | |
| Brara.E00933.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Brara.E02690.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.F01484.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G289100 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.15G056000 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.18G060500 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G070640.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G077610.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| HORVU7Hr1G042940.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Mp3g00390.1 | No alias | RING-H2-class E3 ligase | 0.02 | Orthogroups_2024-Update | |
| Potri.019G010500 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s41_270V6 | No alias | zinc finger (c3hc4-type ring finger) family protein | 0.02 | Orthogroups_2024-Update | |
| Seita.1G186400.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Seita.5G363700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.7G321400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G373200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G189800.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc03g112340 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT3G05200.1) | 0.03 | Orthogroups_2024-Update | |
| Solyc03g123680 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT1G72310.1) | 0.03 | Orthogroups_2024-Update | |
| Solyc11g010330 | No alias | RING/U-box superfamily protein, putative (AHRD V3.3 ***... | 0.03 | Orthogroups_2024-Update | |
| Solyc12g087840 | No alias | RING/U-box superfamily protein, putative (AHRD V3.3 ***... | 0.03 | Orthogroups_2024-Update | |
| Sopen03g041450 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update | |
| Sopen04g006320 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000976 | transcription regulatory region sequence-specific DNA binding | IEP | Predicted GO |
| MF | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding | IEP | Predicted GO |
| MF | GO:0001012 | RNA polymerase II regulatory region DNA binding | IEP | Predicted GO |
| MF | GO:0001067 | regulatory region nucleic acid binding | IEP | Predicted GO |
| MF | GO:0004806 | triglyceride lipase activity | IEP | Predicted GO |
| CC | GO:0005778 | peroxisomal membrane | IEP | Predicted GO |
| BP | GO:0007165 | signal transduction | IEP | Predicted GO |
| MF | GO:0016298 | lipase activity | IEP | Predicted GO |
| BP | GO:0016559 | peroxisome fission | IEP | Predicted GO |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Predicted GO |
| MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Predicted GO |
| CC | GO:0031903 | microbody membrane | IEP | Predicted GO |
| MF | GO:0032422 | purine-rich negative regulatory element binding | IEP | Predicted GO |
| CC | GO:0042579 | microbody | IEP | Predicted GO |
| MF | GO:0043531 | ADP binding | IEP | Predicted GO |
| MF | GO:0044212 | transcription regulatory region DNA binding | IEP | Predicted GO |
| CC | GO:0044438 | microbody part | IEP | Predicted GO |
| CC | GO:0044439 | peroxisomal part | IEP | Predicted GO |
| BP | GO:0048285 | organelle fission | IEP | Predicted GO |
| CC | GO:0098805 | whole membrane | IEP | Predicted GO |
| MF | GO:1990837 | sequence-specific double-stranded DNA binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 161 | 204 |
| No external refs found! |