Brara.H01340.1

Description : component *(eS6) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001972 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001972_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.H01340.1
Cluster	HCAA Clusters: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
172795	No alias	Ribosomal protein S6e	0.19	Orthogroups_2024-Update
A4A49_38773	No alias	40s ribosomal protein s6-2	0.1	Orthogroups_2024-Update
A4A49_58422	No alias	40s ribosomal protein s6-1	0.16	Orthogroups_2024-Update
A4A49_61057	No alias	40s ribosomal protein s6-1	0.11	Orthogroups_2024-Update
Bradi1g21320	No alias	Ribosomal protein S6e	0.06	Orthogroups_2024-Update
Bradi1g60730	No alias	Ribosomal protein S6e	0.17	Orthogroups_2024-Update
Brara.C00414.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Brara.J02318.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Cre09.g400650	No alias	Ribosomal protein S6e	0.1	Orthogroups_2024-Update
GRMZM2G054136	No alias	Ribosomal protein S6e	0.02	Orthogroups_2024-Update
GRMZM5G851698	No alias	Ribosomal protein S6e	0.12	Orthogroups_2024-Update
Glyma.07G198600	No alias	Ribosomal protein S6e	0.2	Orthogroups_2024-Update
Glyma.08G343800	No alias	Ribosomal protein S6e	0.1	Orthogroups_2024-Update
Glyma.13G177800	No alias	Ribosomal protein S6e	0.09	Orthogroups_2024-Update
Glyma.13G237800	No alias	Ribosomal protein S6e	0.16	Orthogroups_2024-Update
Glyma.15G075600	No alias	Ribosomal protein S6e	0.19	Orthogroups_2024-Update
Glyma.18G151800	No alias	Ribosomal protein S6e	0.03	Orthogroups_2024-Update
HORVU2Hr1G010870.8	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
HORVU2Hr1G010890.2	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
HORVU2Hr1G029890.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Kfl00053_0450	kfl00053_0450_v1.1	(q9m3v8\|rs6_aspof : 374.0) 40S ribosomal protein S6 -...	0.14	Orthogroups_2024-Update
LOC_Os03g27260	No alias	40S ribosomal protein S6, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os07g42950	No alias	40S ribosomal protein S6, putative, expressed	0.05	Orthogroups_2024-Update
MA_10426804g0010	No alias	(q9m3v8\|rs6_aspof : 406.0) 40S ribosomal protein S6 -...	0.09	Orthogroups_2024-Update
MA_72828g0010	No alias	(q9m3v8\|rs6_aspof : 368.0) 40S ribosomal protein S6 -...	0.07	Orthogroups_2024-Update
Mp4g01750.1	No alias	component RPS6 of SSU proteome	0.1	Orthogroups_2024-Update
PSME_00020471-RA	No alias	(q9m3v8\|rs6_aspof : 393.0) 40S ribosomal protein S6 -...	0.04	Orthogroups_2024-Update
Potri.005G072700	No alias	Ribosomal protein S6e	0.06	Orthogroups_2024-Update
Potri.007G096300	No alias	Ribosomal protein S6e	0.09	Orthogroups_2024-Update
Pp1s253_7V6	No alias	40S ribosomal protein S6 [Asparagus officinalis]	0.15	Orthogroups_2024-Update
Pp1s311_33V6	No alias	40S ribosomal protein S6 [Asparagus officinalis]	0.04	Orthogroups_2024-Update
Seita.2G394600.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Seita.3G362000.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.19	Orthogroups_2024-Update
Sobic.002G379500.3	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.2	Orthogroups_2024-Update
Sobic.008G098800.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.25	Orthogroups_2024-Update
Solyc08g006040	No alias	40S ribosomal protein S6 (AHRD V3.3 *** K4CI93_SOLLC)	0.16	Orthogroups_2024-Update
Solyc08g074240	No alias	40S ribosomal protein S6 (AHRD V3.3 *** K4CME5_SOLLC)	0.22	Orthogroups_2024-Update
Solyc12g096300	No alias	40S ribosomal protein S6 (AHRD V3.3 *** K4DHA3_SOLLC)	0.22	Orthogroups_2024-Update
Sopen08g002010	No alias	Ribosomal protein S6e	0.22	Orthogroups_2024-Update
Sopen08g022890	No alias	Ribosomal protein S6e	0.23	Orthogroups_2024-Update
Sopen12g032160	No alias	Ribosomal protein S6e	0.23	Orthogroups_2024-Update
evm.model.contig_441.13	No alias	(q9m3v8\|rs6_aspof : 246.0) 40S ribosomal protein S6 -...	0.28	Orthogroups_2024-Update
evm.model.tig00000704.73	No alias	(at5g10360 : 214.0) RPS6A and RPS6B are fully redundant...	0.1	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003883	CTP synthase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001377	Ribosomal_S6e	1	128

External Links

No external refs found!

Brara.H01340.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation