1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.H01408.1

Brara.H01408.1


Description : regulatory E3 ubiquitin ligase targeted to IRT1 *(IDF1)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H01408.1
Cluster HCAA Clusters: Cluster_368

Target Alias Description ECC score Gene Family Method Actions
121181 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
A4A49_40065 No alias ring-h2 finger protein atl70 0.02 Orthogroups_2024-Update
Bradi3g09395 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g51600 No alias TOXICOS EN LEVADURA 2 0.03 Orthogroups_2024-Update
Brara.I04330.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
GRMZM2G029623 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G067900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G140700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G014600 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os02g35329 No alias RING-H2 finger protein ATL3F, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g52210 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_1252g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_17390g0010 No alias (at3g61550 : 149.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_26001g0020 No alias (at1g72310 : 117.0) Encodes a putative RING-H2 zinc... 0.02 Orthogroups_2024-Update
MA_80729g0030 No alias (at3g16720 : 139.0) RING-H2 protein induced after... 0.02 Orthogroups_2024-Update
PSME_00003023-RA No alias (at1g72200 : 141.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.002G101800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.007G057300 No alias RING-H2 finger A3A 0.02 Orthogroups_2024-Update
Pp1s14_360V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.1G203700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sopen03g005910 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen11g003370 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.tig00000204.87 No alias (at1g72200 : 83.6) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 104 147
No external refs found!