1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.H01443.1

Brara.H01443.1


Description : component *(eL28) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0002199 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002199_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H01443.1
Cluster HCAA Clusters: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
164298 No alias Ribosomal L28e protein family 0.04 Orthogroups_2024-Update
A4A49_23451 No alias 60s ribosomal protein l28-1 0.07 Orthogroups_2024-Update
A4A49_64591 No alias 60s ribosomal protein l28-1 0.08 Orthogroups_2024-Update
Bradi2g18150 No alias Ribosomal L28e protein family 0.04 Orthogroups_2024-Update
Bradi2g47760 No alias Ribosomal L28e protein family 0.06 Orthogroups_2024-Update
Brara.I01133.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Cre11.g467578 No alias Ribosomal L28e protein family 0.14 Orthogroups_2024-Update
GRMZM2G088060 No alias Ribosomal L28e protein family 0.03 Orthogroups_2024-Update
Glyma.07G012800 No alias Ribosomal L28e protein family 0.06 Orthogroups_2024-Update
Glyma.08G196500 No alias Ribosomal L28e protein family 0.03 Orthogroups_2024-Update
Glyma.13G352100 No alias Ribosomal L28e protein family 0.04 Orthogroups_2024-Update
HORVU1Hr1G079370.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
HORVU3Hr1G066430.3 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Kfl00166_0150 kfl00166_0150_v1.1 (at4g29410 : 108.0) Ribosomal L28e protein family;... 0.09 Orthogroups_2024-Update
MA_10428490g0010 No alias (at2g19730 : 181.0) Ribosomal L28e protein family;... 0.05 Orthogroups_2024-Update
Mp1g26940.1 No alias component RPL28 of LSU proteome component 0.06 Orthogroups_2024-Update
PSME_00007702-RA No alias (at2g19730 : 186.0) Ribosomal L28e protein family;... 0.03 Orthogroups_2024-Update
Potri.001G194000 No alias Ribosomal L28e protein family 0.09 Orthogroups_2024-Update
Potri.T165500 No alias Ribosomal L28e protein family 0.03 Orthogroups_2024-Update
Pp1s505_8V6 No alias 60s ribosomal protein l28 0.13 Orthogroups_2024-Update
Pp1s7_390V6 No alias 60s ribosomal protein l28 0.1 Orthogroups_2024-Update
Pp1s98_65V6 No alias 60s ribosomal protein l28 0.06 Orthogroups_2024-Update
Seita.3G162800.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Seita.5G288600.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.003G272500.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sobic.009G215200.2 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Solyc03g121330 No alias 60S ribosomal protein L28, putative (AHRD V3.3 *** B9RKC5_RICCO) 0.08 Orthogroups_2024-Update
Sopen03g040140 No alias Ribosomal L28e protein family 0.13 Orthogroups_2024-Update
Sopen12g022910 No alias Ribosomal L28e protein family 0.06 Orthogroups_2024-Update
evm.model.contig_471.3 No alias no hits & (original description: no original description) 0.14 Orthogroups_2024-Update
evm.model.tig00020710.93 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004418 hydroxymethylbilane synthase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 8 126
No external refs found!