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  5. Brara.H01492.1

Brara.H01492.1


Description : E3 ubiquitin ligase *(RMA/MUSE)


Gene families : OG_42_0000548 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H01492.1
Cluster HCAA Clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Bradi1g12570 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G149028 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G400268 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os03g47500 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
Seita.7G177900.1 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.03 Orthogroups_2024-Update
Seita.9G305200.1 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.03 Orthogroups_2024-Update
Sobic.008G188700.3 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.04 Orthogroups_2024-Update
Solyc02g078320 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT1G19310.1) 0.03 Orthogroups_2024-Update
Solyc10g051270 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G23780.3) 0.02 Orthogroups_2024-Update
evm.model.tig00001331.4 No alias (at1g19310 : 110.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
CC GO:0000813 ESCRT I complex IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR027370 Znf-RING_LisH 22 72
No external refs found!