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  5. Brara.H01540.1

Brara.H01540.1


Description : Unknown function


Gene families : OG_42_0000976 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000976_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H01540.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
At2g35605 No alias Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q93W30] 0.03 Orthogroups_2024-Update
Brara.A00388.1 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.03 Orthogroups_2024-Update
GRMZM2G077088 No alias SWIB/MDM2 domain superfamily protein 0.03 Orthogroups_2024-Update
GRMZM6G910222 No alias SWIB/MDM2 domain superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G154200 No alias SWIB/MDM2 domain superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os02g03730 No alias SWIB/MDM2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
Seita.1G099300.1 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.03 Orthogroups_2024-Update
Sobic.001G081700.1 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.03 Orthogroups_2024-Update
Sobic.004G028400.1 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.03 Orthogroups_2024-Update
Solyc01g107330 No alias SWIB_MDM2 domain protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 24 95
No external refs found!