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  5. Brara.H01597.1

Brara.H01597.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H01597.1
Cluster HCAA Clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.03 Orthogroups_2024-Update
A4A49_23917 No alias putative pectate lyase 13 0.05 Orthogroups_2024-Update
LOC_Os05g22800 No alias pectate lyase precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10437227g0010 No alias (at4g24780 : 367.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Mp8g00770.1 No alias pectate lyase 0.02 Orthogroups_2024-Update
PSME_00020782-RA No alias (at5g63180 : 492.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00041064-RA No alias (at1g67750 : 595.0) Pectate lyase family protein;... 0.04 Orthogroups_2024-Update
Potri.014G178100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Pp1s563_1V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s84_82V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Solyc03g111690 No alias Pectate lyase family protein (AHRD V3.3 *** AT1G67750.1) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 140 323
No external refs found!