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  5. Brara.H02028.1

Brara.H02028.1


Description : Unknown function


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H02028.1
Cluster HCAA Clusters: Cluster_366

Target Alias Description ECC score Gene Family Method Actions
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
Sobic.003G124600.1 No alias RNA helicase *(Prp2) 0.02 Orthogroups_2024-Update
Sobic.004G174200.1 No alias RNA helicase *(Prp2) 0.03 Orthogroups_2024-Update
Solyc09g097820 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Sopen01g053030 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
MF GO:0019905 syntaxin binding IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 560 642
IPR007502 Helicase-assoc_dom 400 476
IPR001650 Helicase_C 208 335
IPR003593 AAA+_ATPase 21 154
No external refs found!