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  5. Brara.H02093.1

Brara.H02093.1


Description : C2H2 subclass IDD transcription factor


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H02093.1
Cluster HCAA Clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
A4A49_35271 No alias protein indeterminate-domain 2 0.03 Orthogroups_2024-Update
Bradi1g18370 No alias C2H2-like zinc finger protein 0.05 Orthogroups_2024-Update
Brara.A02400.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Brara.G02535.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
Brara.I02041.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
Glyma.07G009100 No alias indeterminate(ID)-domain 7 0.03 Orthogroups_2024-Update
Glyma.08G092300 No alias indeterminate(ID)-domain 14 0.05 Orthogroups_2024-Update
Glyma.13G139000 No alias C2H2-like zinc finger protein 0.04 Orthogroups_2024-Update
Glyma.13G327500 No alias indeterminate(ID)-domain 2 0.03 Orthogroups_2024-Update
Glyma.13G349500 No alias indeterminate(ID)-domain 7 0.04 Orthogroups_2024-Update
Glyma.20G005800 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.20G184000 No alias indeterminate(ID)-domain 4 0.04 Orthogroups_2024-Update
Pp1s125_69V6 No alias nucleic acid binding 0.02 Orthogroups_2024-Update
Seita.1G175100.1 No alias C2H2 subclass IDD transcription factor 0.02 Orthogroups_2024-Update
Seita.1G268600.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Seita.2G303400.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Seita.5G269600.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Seita.9G504400.1 No alias C2H2 subclass IDD transcription factor & elicitor... 0.03 Orthogroups_2024-Update
Sobic.003G001300.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Sopen01g042900 No alias Zinc finger, C2H2 type 0.03 Orthogroups_2024-Update
Sopen03g040470 No alias Zinc finger, C2H2 type 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016125 sterol metabolic process IEP Predicted GO
BP GO:0016126 sterol biosynthetic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!