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  5. Brara.H02105.1

Brara.H02105.1


Description : RNA editing factor *(OTP90)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H02105.1
Cluster HCAA Clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
94907 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At3g63370 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Orthogroups_2024-Update
At4g13650 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Orthogroups_2024-Update
Bradi1g36900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g28137 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A01167.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
GRMZM2G138303 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g10800 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_68933g0010 No alias (at5g04780 : 542.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00035796-RA No alias (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Seita.8G097200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen04g026710 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 380 409
IPR002885 Pentatricopeptide_repeat 452 474
IPR002885 Pentatricopeptide_repeat 348 378
IPR002885 Pentatricopeptide_repeat 217 242
IPR002885 Pentatricopeptide_repeat 552 575
IPR002885 Pentatricopeptide_repeat 84 105
IPR002885 Pentatricopeptide_repeat 187 213
IPR002885 Pentatricopeptide_repeat 320 346
IPR002885 Pentatricopeptide_repeat 478 525
IPR002885 Pentatricopeptide_repeat 248 293
IPR002885 Pentatricopeptide_repeat 112 159
IPR032867 DYW_dom 693 786
No external refs found!