- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3]
Gene families : OG_42_0001839 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001839_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Arabidopsis release: At2g27840 | |
| Cluster | HCCA clusters: Cluster_6 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 428242 | No alias | histone deacetylase 2B | 0.02 | Orthogroups_2024-Update | |
| A4A49_64689 | No alias | histone deacetylase hdt1 | 0.03 | Orthogroups_2024-Update | |
| Bradi2g14120 | No alias | histone deacetylase 2B | 0.06 | Orthogroups_2024-Update | |
| Brara.B00987.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.07 | Orthogroups_2024-Update | |
| Brara.C01007.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.04 | Orthogroups_2024-Update | |
| Brara.D01665.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.08 | Orthogroups_2024-Update | |
| Brara.J01458.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G100146 | No alias | histone deacetylase 3 | 0.05 | Orthogroups_2024-Update | |
| Glyma.11G189500 | No alias | histone deacetylase 2B | 0.04 | Orthogroups_2024-Update | |
| Glyma.12G181400 | No alias | histone deacetylase 2C | 0.09 | Orthogroups_2024-Update | |
| Glyma.13G319500 | No alias | histone deacetylase 2C | 0.06 | Orthogroups_2024-Update | |
| Kfl00300_0030 | kfl00300_0030_v1.1 | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
| LOC_Os05g51830 | No alias | ZOS5-12 - C2H2 zinc finger protein, expressed | 0.04 | Orthogroups_2024-Update | |
| MA_3905g0020 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
| MA_601245g0010 | No alias | (original description: no original description) | 0.05 | Orthogroups_2024-Update | |
| Potri.004G188800 | No alias | histone deacetylase 2C | 0.04 | Orthogroups_2024-Update | |
| Potri.009G149400 | No alias | histone deacetylase 3 | 0.06 | Orthogroups_2024-Update | |
| Pp1s7_389V6 | No alias | histone deacetylase | 0.05 | Orthogroups_2024-Update | |
| Seita.3G117500.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.08 | Orthogroups_2024-Update | |
| Seita.5G422200.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.13 | Orthogroups_2024-Update | |
| Sobic.003G396600.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.05 | Orthogroups_2024-Update | |
| Sobic.009G211700.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.06 | Orthogroups_2024-Update | |
| Solyc09g009030 | No alias | Histone deacetylase HDT1 (AHRD V3.3 *** HDT1_SOLCH) | 0.07 | Orthogroups_2024-Update | |
| Solyc11g066840 | No alias | Histone deacetylase-like protein-like (AHRD V3.3 ***... | 0.09 | Orthogroups_2024-Update | |
| evm.model.tig00000388.65 | No alias | (at4g25340 : 88.6) Encodes a member of the FKBP-type... | 0.08 | Orthogroups_2024-Update | |
| evm.model.tig00000983.33 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | Predicted GO |
| BP | GO:0001101 | response to acid chemical | IEP | Predicted GO |
| BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
| MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Predicted GO |
| MF | GO:0004017 | adenylate kinase activity | IEP | Predicted GO |
| MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Predicted GO |
| MF | GO:0004797 | thymidine kinase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009415 | response to water | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
| MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | Predicted GO |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Predicted GO |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
| MF | GO:0019136 | deoxynucleoside kinase activity | IEP | Predicted GO |
| MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Predicted GO |
| MF | GO:0019206 | nucleoside kinase activity | IEP | Predicted GO |
| MF | GO:0019238 | cyclohydrolase activity | IEP | Predicted GO |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
| BP | GO:0031167 | rRNA methylation | IEP | Predicted GO |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| MF | GO:0050145 | nucleoside monophosphate kinase activity | IEP | Predicted GO |
| BP | GO:0070475 | rRNA base methylation | IEP | Predicted GO |
| BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| BP | GO:1901700 | response to oxygen-containing compound | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |