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  5. Brara.H02506.1

Brara.H02506.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H02506.1
Cluster HCAA Clusters: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
74749 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_21718 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_36693 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
Bradi3g36470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G031588 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G144071 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G158839 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G163396 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G430710 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G474929 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
Glyma.14G224400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G035330.2 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00017819-RA No alias (at3g03580 : 689.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00052053-RA No alias (at1g11290 : 599.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.001G258500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G027800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.005G005700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G181800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G211400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.012G135600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G047600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.T137000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G168900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G277600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc07g005850 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen09g035030 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
MF GO:0008199 ferric iron binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 600 644
IPR032867 DYW_dom 812 904
IPR002885 Pentatricopeptide_repeat 328 355
IPR002885 Pentatricopeptide_repeat 470 496
IPR002885 Pentatricopeptide_repeat 298 325
IPR002885 Pentatricopeptide_repeat 429 455
IPR002885 Pentatricopeptide_repeat 25 54
IPR002885 Pentatricopeptide_repeat 498 527
IPR002885 Pentatricopeptide_repeat 227 253
IPR002885 Pentatricopeptide_repeat 126 156
IPR002885 Pentatricopeptide_repeat 401 426
IPR002885 Pentatricopeptide_repeat 199 224
No external refs found!