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Description : component *(eS12) of small ribosomal-subunit (SSU) proteome
Gene families : OG_42_0002151 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002151_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.H02521.1 | |
| Cluster | HCAA Clusters: Cluster_8 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 441919 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.12 | Orthogroups_2024-Update | |
| At2g32060 | No alias | 40S ribosomal protein S12... | 0.07 | Orthogroups_2024-Update | |
| Bradi1g06520 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.13 | Orthogroups_2024-Update | |
| Bradi1g53740 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.25 | Orthogroups_2024-Update | |
| Brara.D01947.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Brara.E01168.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Cre04.g214503 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.14 | Orthogroups_2024-Update | |
| GRMZM2G063340 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.12 | Orthogroups_2024-Update | |
| Glyma.07G023900 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.11 | Orthogroups_2024-Update | |
| Glyma.08G217700 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.1 | Orthogroups_2024-Update | |
| Glyma.13G369700 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.12 | Orthogroups_2024-Update | |
| Glyma.15G003700 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.05 | Orthogroups_2024-Update | |
| HORVU2Hr1G053290.6 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
| HORVU5Hr1G103330.3 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Kfl00170_0060 | kfl00170_0060_v1.1 | (q9xhs0|rs12_horvu : 207.0) 40S ribosomal protein S12 -... | 0.09 | Orthogroups_2024-Update | |
| MA_16920g0010 | No alias | (q9xhs0|rs12_horvu : 225.0) 40S ribosomal protein S12 -... | 0.11 | Orthogroups_2024-Update | |
| Mp7g11470.1 | No alias | component RPS12 of SSU proteome | 0.05 | Orthogroups_2024-Update | |
| PSME_00017034-RA | No alias | (q9xhs0|rs12_horvu : 220.0) 40S ribosomal protein S12 -... | 0.04 | Orthogroups_2024-Update | |
| Potri.001G046600 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.1 | Orthogroups_2024-Update | |
| Potri.002G056200 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.04 | Orthogroups_2024-Update | |
| Pp1s194_130V6 | No alias | 40s ribosomal protein s12 | 0.14 | Orthogroups_2024-Update | |
| Pp1s26_289V6 | No alias | 40s ribosomal protein s12 | 0.03 | Orthogroups_2024-Update | |
| Seita.1G205300.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.16 | Orthogroups_2024-Update | |
| Seita.2G088300.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.18 | Orthogroups_2024-Update | |
| Seita.3G235300.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.12 | Orthogroups_2024-Update | |
| Sobic.002G081600.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.22 | Orthogroups_2024-Update | |
| Sobic.009G144300.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Sobic.009G242400.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.17 | Orthogroups_2024-Update | |
| Solyc01g103800 | No alias | 40S ribosomal protein S12 (AHRD V3.3 *** K4B1V5_SOLLC) | 0.08 | Orthogroups_2024-Update | |
| Solyc12g042650 | No alias | 40S ribosomal protein S12 (AHRD V3.3 *** M1CSI4_SOLTU) | 0.17 | Orthogroups_2024-Update | |
| Sopen01g046200 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | 0.14 | Orthogroups_2024-Update | |
| Sopen12g021800 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | 0.15 | Orthogroups_2024-Update | |
| evm.model.contig_3478.2 | No alias | (q9xhs0|rs12_horvu : 146.0) 40S ribosomal protein S12 -... | 0.26 | Orthogroups_2024-Update | |
| evm.model.tig00020903.34 | No alias | (q9xhs0|rs12_horvu : 149.0) 40S ribosomal protein S12 -... | 0.18 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000491 | small nucleolar ribonucleoprotein complex assembly | IEP | Predicted GO |
| BP | GO:0000492 | box C/D snoRNP assembly | IEP | Predicted GO |
| MF | GO:0001181 | RNA polymerase I general transcription initiation factor activity | IEP | Predicted GO |
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004743 | pyruvate kinase activity | IEP | Predicted GO |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0004814 | arginine-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006361 | transcription initiation from RNA polymerase I promoter | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
| BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| MF | GO:0016874 | ligase activity | IEP | Predicted GO |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Predicted GO |
| MF | GO:0030955 | potassium ion binding | IEP | Predicted GO |
| MF | GO:0031420 | alkali metal ion binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| CC | GO:0035145 | exon-exon junction complex | IEP | Predicted GO |
| BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| MF | GO:0140223 | general transcription initiation factor activity | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004038 | Ribosomal_L7Ae/L30e/S12e/Gad45 | 32 | 125 |
| No external refs found! |