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  5. Brara.H02525.1

Brara.H02525.1


Description : component *(LHCb6) of LHC-II complex


Gene families : OG_42_0005004 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H02525.1
Cluster HCAA Clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
271833 No alias light harvesting complex photosystem II subunit 6 0.03 Orthogroups_2024-Update
A4A49_19796 No alias chlorophyll a-b binding protein cp24 10a, chloroplastic 0.06 Orthogroups_2024-Update
At1g15820 No alias Chlorophyll a-b binding protein, chloroplastic... 0.09 Orthogroups_2024-Update
Bradi5g12150 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
GRMZM2G088983 No alias light harvesting complex photosystem II subunit 6 0.04 Orthogroups_2024-Update
GRMZM2G092427 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
Glyma.08G074000 No alias light harvesting complex photosystem II subunit 6 0.06 Orthogroups_2024-Update
Glyma.08G180000 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
Glyma.15G052400 No alias light harvesting complex photosystem II subunit 6 0.06 Orthogroups_2024-Update
HORVU2Hr1G079920.4 No alias component *(LHCb6) of LHC-II complex 0.03 Orthogroups_2024-Update
Kfl00276_0010 kfl00276_0010_v1.1 (at1g15820 : 338.0) Lhcb6 protein (Lhcb6), light... 0.03 Orthogroups_2024-Update
LOC_Os04g38410 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.03 Orthogroups_2024-Update
Pp1s28_315V6 No alias chloroplast light-harvesting complex ii protein 0.05 Orthogroups_2024-Update
Pp1s28_319V6 No alias chloroplast light-harvesting complex ii protein 0.05 Orthogroups_2024-Update
Seita.7G121800.1 No alias component *(LHCb6) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.006G264201.1 No alias component *(LHCb6) of LHC-II complex 0.05 Orthogroups_2024-Update
Solyc01g105030 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc01g105050 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Sopen01g047560 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen01g047580 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010242 oxygen evolving activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 71 247
No external refs found!