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  5. Brara.H02532.1

Brara.H02532.1


Description : SSU processome assembly factor *(UTP1/PWP2)


Gene families : OG_42_0004382 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004382_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H02532.1
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
A4A49_25591 No alias protein mut11 0.04 Orthogroups_2024-Update
At1g15440 No alias Periodic tryptophan protein 2... 0.04 Orthogroups_2024-Update
Bradi2g19560 No alias periodic tryptophan protein 2 0.03 Orthogroups_2024-Update
Cre06.g254150 No alias periodic tryptophan protein 2 0.07 Orthogroups_2024-Update
HORVU1Hr1G086380.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.03 Orthogroups_2024-Update
Kfl00198_0200 kfl00198_0200_v1.1 (at1g15440 : 905.0) periodic tryptophan protein 2... 0.02 Orthogroups_2024-Update
LOC_Os05g44320 No alias WD domain, G-beta repeat domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.001G173500 No alias periodic tryptophan protein 2 0.03 Orthogroups_2024-Update
Seita.3G175900.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.06 Orthogroups_2024-Update
Sobic.009G201200.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.07 Orthogroups_2024-Update
Solyc03g120080 No alias WD40 repeat-like protein (AHRD V3.3 *** I0YM64_COCSC) 0.06 Orthogroups_2024-Update
Sopen03g038950 No alias WD domain, G-beta repeat 0.07 Orthogroups_2024-Update
evm.model.contig_3478.9 No alias (at1g15440 : 433.0) periodic tryptophan protein 2... 0.01 Orthogroups_2024-Update
evm.model.tig00000076.89 No alias (at1g15440 : 99.4) periodic tryptophan protein 2 (PWP2);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044445 cytosolic part IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:0090730 Las1 complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 404 441
IPR001680 WD40_repeat 368 399
IPR001680 WD40_repeat 492 527
IPR001680 WD40_repeat 540 569
IPR007148 SSU_processome_Utp12 772 877
No external refs found!