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  5. Brara.H02776.1

Brara.H02776.1


Description : LIM-type transcription factor


Gene families : OG_42_0000555 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000555_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H02776.1
Cluster HCAA Clusters: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
A4A49_58710 No alias lim domain-containing protein wlim1 0.03 Orthogroups_2024-Update
Brara.E00591.1 No alias LIM-type transcription factor 0.03 Orthogroups_2024-Update
Brara.F00672.1 No alias LIM-type transcription factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G060580.1 No alias LIM-type transcription factor 0.03 Orthogroups_2024-Update
Mp4g02460.1 No alias transcription factor (LIM) 0.02 Orthogroups_2024-Update
Sopen05g028200 No alias LIM domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001781 Znf_LIM 110 164
IPR001781 Znf_LIM 10 65
No external refs found!