Brara.H03058.1

Description : component *(uS19) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001901 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001901_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.H03058.1
Cluster	HCAA Clusters: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
172403	No alias	Ribosomal protein S19 family protein	0.2	Orthogroups_2024-Update
At1g04270	No alias	40S ribosomal protein S15-1...	0.08	Orthogroups_2024-Update
At5g09510	No alias	40S ribosomal protein S15-4...	0.05	Orthogroups_2024-Update
Bradi1g05340	No alias	Ribosomal protein S19 family protein	0.22	Orthogroups_2024-Update
Bradi1g55280	No alias	Ribosomal protein S19 family protein	0.13	Orthogroups_2024-Update
Brara.J00241.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Cre08.g360900	No alias	Ribosomal protein S19 family protein	0.27	Orthogroups_2024-Update
Glyma.05G234800	No alias	Ribosomal protein S19 family protein	0.06	Orthogroups_2024-Update
Glyma.07G269600	No alias	Ribosomal protein S19 family protein	0.12	Orthogroups_2024-Update
Glyma.08G042300	No alias	Ribosomal protein S19 family protein	0.15	Orthogroups_2024-Update
Glyma.17G004300	No alias	Ribosomal protein S19 family protein	0.18	Orthogroups_2024-Update
HORVU2Hr1G057430.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.18	Orthogroups_2024-Update
Kfl00160_0050	kfl00160_0050_v1.1	(p31674\|rs15_orysa : 187.0) 40S ribosomal protein S15 -...	0.11	Orthogroups_2024-Update
LOC_Os03g58430	No alias	40S ribosomal protein S15, putative, expressed	0.11	Orthogroups_2024-Update
LOC_Os07g08660	No alias	40S ribosomal protein S15, putative, expressed	0.05	Orthogroups_2024-Update
MA_14543g0010	No alias	(p31674\|rs15_orysa : 245.0) 40S ribosomal protein S15 -...	0.12	Orthogroups_2024-Update
Mp3g15000.1	No alias	component RPS15 of SSU proteome	0.05	Orthogroups_2024-Update
PSME_00033145-RA	No alias	(p31674\|rs15_orysa : 265.0) 40S ribosomal protein S15 -...	0.15	Orthogroups_2024-Update
Pp1s13_413V6	No alias	40s ribosomal protein s15	0.14	Orthogroups_2024-Update
Pp1s223_96V6	No alias	40s ribosomal protein s15	0.1	Orthogroups_2024-Update
Pp1s47_42V6	No alias	40s ribosomal protein s15	0.28	Orthogroups_2024-Update
Pp1s91_124V6	No alias	40s ribosomal protein s15	0.26	Orthogroups_2024-Update
Seita.2G059900.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Seita.9G053600.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Sobic.001G054900.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.27	Orthogroups_2024-Update
Sobic.002G056200.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.23	Orthogroups_2024-Update
Sobic.009G191200.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Solyc02g082000	No alias	Ribosomal protein S19 family protein (AHRD V3.3 *** AT5G09500.1)	0.3	Orthogroups_2024-Update
Solyc06g053820	No alias	Chloroplast omega-3 fatty acid desaturase (AHRD V3.3 --*...	0.17	Orthogroups_2024-Update
Solyc09g083370	No alias	Ribosomal protein S19 family protein (AHRD V3.3 *** AT5G09510.1)	0.24	Orthogroups_2024-Update
Sopen02g026630	No alias	Ribosomal protein S19	0.32	Orthogroups_2024-Update
Sopen06g018940	No alias	Ribosomal protein S19	0.22	Orthogroups_2024-Update
Sopen09g032290	No alias	Ribosomal protein S19	0.14	Orthogroups_2024-Update
evm.model.contig_651.1	No alias	(at5g09500 : 219.0) Ribosomal protein S19 family...	0.39	Orthogroups_2024-Update
evm.model.tig00020830.61	No alias	(p31674\|rs15_orysa : 236.0) 40S ribosomal protein S15 -...	0.37	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006275	regulation of DNA replication	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predicted GO
BP	GO:0008156	negative regulation of DNA replication	IEP	Predicted GO
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predicted GO
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009117	nucleotide metabolic process	IEP	Predicted GO
BP	GO:0009165	nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Predicted GO
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009892	negative regulation of metabolic process	IEP	Predicted GO
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
BP	GO:0045005	DNA-dependent DNA replication maintenance of fidelity	IEP	Predicted GO
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0048478	replication fork protection	IEP	Predicted GO
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predicted GO
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predicted GO
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Predicted GO
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Predicted GO
BP	GO:2000104	negative regulation of DNA-dependent DNA replication	IEP	Predicted GO
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002222	Ribosomal_S19	50	135

External Links

No external refs found!

Brara.H03058.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation