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  5. Brara.H03082.1

Brara.H03082.1


Description : clade E phosphatase


Gene families : OG_42_0000218 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000218_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H03082.1
Cluster HCAA Clusters: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
Brara.G03679.1 No alias clade E phosphatase 0.05 Orthogroups_2024-Update
HORVU2Hr1G039710.1 No alias clade E phosphatase 0.03 Orthogroups_2024-Update
LOC_Os05g29030 No alias protein phosphatase 2C, putative, expressed 0.02 Orthogroups_2024-Update
Potri.006G232700 No alias Protein phosphatase 2C family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
MF GO:0019786 Atg8-specific protease activity IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 121 332
No external refs found!