1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.H03121.1

Brara.H03121.1


Description : RAV/NGATHA-type transcription factor


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H03121.1
Cluster HCAA Clusters: Cluster_353

Target Alias Description ECC score Gene Family Method Actions
A4A49_11520 No alias b3 domain-containing protein 0.03 Orthogroups_2024-Update
A4A49_27413 No alias ap2erf and b3 domain-containing transcription factor rav1 0.06 Orthogroups_2024-Update
At1g68840 No alias TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0] 0.04 Orthogroups_2024-Update
Brara.E00098.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.F00801.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.04 Orthogroups_2024-Update
Brara.I05049.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
GRMZM2G082227 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Glyma.01G087500 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.02G099500 No alias AP2/B3 transcription factor family protein 0.05 Orthogroups_2024-Update
Glyma.07G048200 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Glyma.19G261300 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G010190.5 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.02 Orthogroups_2024-Update
LOC_Os01g04750 No alias B3 DNA binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g39190 No alias B3 DNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10428163g0010 No alias (at1g13260 : 267.0) Encodes an AP2/B3 domain... 0.03 Orthogroups_2024-Update
MA_10433425g0010 No alias (at1g25560 : 91.3) Encodes a member of the RAV... 0.02 Orthogroups_2024-Update
MA_178646g0010 No alias (at1g68840 : 271.0) Rav2 is part of a complex that has... 0.03 Orthogroups_2024-Update
PSME_00032471-RA No alias (at1g68840 : 300.0) Rav2 is part of a complex that has... 0.03 Orthogroups_2024-Update
Potri.006G208100 No alias AP2/B3-like transcriptional factor family protein 0.05 Orthogroups_2024-Update
Seita.6G064600.1 No alias RAV/NGATHA-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.003G265200.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.02 Orthogroups_2024-Update
Solyc04g007000 No alias AP2/B3 transcription factor family protein (AHRD V3.3... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 54 153
No external refs found!