Brara.H03122.1


Description : circadian clock core oscillator protein *(LHY/CCA1) & transcription factor *(REVEILLE)


Gene families : OG_42_0008557 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008557_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H03122.1
Cluster HCAA Clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
166821 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
A4A49_29102 No alias protein lhy 0.07 Orthogroups_2024-Update
At1g01060 No alias LHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761] 0.07 Orthogroups_2024-Update
Bradi3g16515 No alias Homeodomain-like superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G474769 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.03G261800 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G260900 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G070870.4 No alias circadian clock core oscillator protein *(LHY/CCA1) &... 0.04 Orthogroups_2024-Update
Potri.002G180800 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.6G055700.1 No alias circadian clock core oscillator protein *(LHY/CCA1) &... 0.04 Orthogroups_2024-Update
Sobic.007G047400.1 No alias circadian clock core oscillator protein *(LHY/CCA1) &... 0.04 Orthogroups_2024-Update
Solyc10g005080 No alias Late elongated hypocotyl (AHRD V3.3 *** J9PV71_NICAT) 0.04 Orthogroups_2024-Update
Sopen10g001100 No alias Myb-like DNA-binding domain 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 27 70
No external refs found!