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  5. Brara.I00027.1

Brara.I00027.1


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0002100 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002100_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00027.1
Cluster HCAA Clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Kfl00339_0110 kfl00339_0110_v1.1 (at1g02080 : 768.0) transcription regulators; FUNCTIONS... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004615 phosphomannomutase activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
BP GO:0009225 nucleotide-sugar metabolic process IEP Predicted GO
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Predicted GO
BP GO:0009298 GDP-mannose biosynthetic process IEP Predicted GO
CC GO:0009512 cytochrome b6f complex IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
BP GO:0019673 GDP-mannose metabolic process IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007196 CCR4-Not_Not1_C 1111 1472
IPR032194 CNOT1_HEAT 507 653
IPR032191 CNOT1_CAF1_bind 692 911
No external refs found!