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  5. Brara.I00071.1

Brara.I00071.1


Description : plastidial RNA basal splicing factor *(WTF1)


Gene families : OG_42_0004417 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004417_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00071.1
Cluster HCAA Clusters: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
Bradi2g15890 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 Orthogroups_2024-Update
GRMZM2G403797 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.05 Orthogroups_2024-Update
Glyma.03G002600 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.05 Orthogroups_2024-Update
MA_158434g0010 No alias (at4g01037 : 377.0) what's this factor? (WTF1); CONTAINS... 0.02 Orthogroups_2024-Update
Potri.002G169300 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.04 Orthogroups_2024-Update
Potri.014G096801 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.04 Orthogroups_2024-Update
Seita.3G139500.1 No alias plastidial RNA basal splicing factor *(WTF1) 0.03 Orthogroups_2024-Update
Sobic.009G238100.2 No alias plastidial RNA basal splicing factor *(WTF1) 0.03 Orthogroups_2024-Update
Sopen01g039420 No alias Plant organelle RNA recognition domain 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription factor complex IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004418 hydroxymethylbilane synthase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006360 transcription by RNA polymerase I IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 747 795
IPR002885 Pentatricopeptide_repeat 852 895
IPR002885 Pentatricopeptide_repeat 676 725
IPR032867 DYW_dom 1064 1156
IPR002885 Pentatricopeptide_repeat 924 948
IPR002885 Pentatricopeptide_repeat 578 602
IPR021099 PORR_domain 75 403
No external refs found!