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  5. Brara.I00185.1

Brara.I00185.1


Description : component *(PsaD) of PS-I complex


Gene families : OG_42_0006268 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006268_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00185.1
Cluster HCAA Clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
A4A49_07455 No alias photosystem i reaction center subunit ii, chloroplastic 0.15 Orthogroups_2024-Update
A4A49_20575 No alias photosystem i reaction center subunit ii, chloroplastic 0.11 Orthogroups_2024-Update
At1g03130 No alias Photosystem I reaction center subunit II-2,... 0.11 Orthogroups_2024-Update
At4g02770 No alias Photosystem I reaction center subunit II-1,... 0.12 Orthogroups_2024-Update
Bradi1g04700 No alias photosystem I subunit D-2 0.08 Orthogroups_2024-Update
Cre05.g238332 No alias photosystem I subunit D-2 0.1 Orthogroups_2024-Update
GRMZM2G024150 No alias photosystem I subunit D-2 0.05 Orthogroups_2024-Update
Glyma.10G249000 No alias photosystem I subunit D-2 0.1 Orthogroups_2024-Update
Glyma.20G144700 No alias photosystem I subunit D-2 0.1 Orthogroups_2024-Update
HORVU5Hr1G109710.1 No alias component *(PsaD) of PS-I complex 0.1 Orthogroups_2024-Update
Kfl00193_0150 kfl00193_0150_v1.1 (p12353|psad_spiol : 246.0) Photosystem I reaction... 0.07 Orthogroups_2024-Update
MA_9169733g0010 No alias (p32869|psad_cucsa : 194.0) Photosystem I reaction... 0.06 Orthogroups_2024-Update
Mp5g04200.1 No alias component PsaD of PS-I complex 0.11 Orthogroups_2024-Update
Potri.008G151600 No alias photosystem I subunit D-2 0.04 Orthogroups_2024-Update
Pp1s1_788V6 No alias psi reaction center subunit ii 0.14 Orthogroups_2024-Update
Pp1s4_321V6 No alias psi reaction center subunit ii 0.17 Orthogroups_2024-Update
Pp1s77_69V6 No alias psi reaction center subunit ii 0.15 Orthogroups_2024-Update
Seita.9G045100.1 No alias component *(PsaD) of PS-I complex 0.06 Orthogroups_2024-Update
Sobic.001G046900.1 No alias component *(PsaD) of PS-I complex 0.11 Orthogroups_2024-Update
Solyc06g054260 No alias photosystem 1 reaction center protein subunit 2 0.16 Orthogroups_2024-Update
Sopen06g019380 No alias PsaD 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009522 photosystem I IEA 16Dec
CC GO:0009538 photosystem I reaction center IEA 16Dec
BP GO:0015979 photosynthesis IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010242 oxygen evolving activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003685 PsaD 75 206
No external refs found!