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  5. Brara.I00271.1

Brara.I00271.1


Description : circadian clock activation factor *(TCP20) & TCP-type transcription factor


Gene families : OG_42_0000261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000261_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00271.1
Cluster HCAA Clusters: Cluster_335

Target Alias Description ECC score Gene Family Method Actions
At3g27010 No alias TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1] 0.04 Orthogroups_2024-Update
Brara.D01115.1 No alias TCP-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.04G170600 No alias TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 0.03 Orthogroups_2024-Update
Glyma.20G103400 No alias TCP family transcription factor 0.04 Orthogroups_2024-Update
Glyma.20G154400 No alias TCP family transcription factor 0.04 Orthogroups_2024-Update
LOC_Os08g43160 No alias TCP family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
MA_16752g0010 No alias "(at3g47620 : 145.0) Encodes a transcription factor... 0.03 Orthogroups_2024-Update
Sopen05g003300 No alias TCP family transcription factor 0.02 Orthogroups_2024-Update
Sopen06g023690 No alias TCP family transcription factor 0.02 Orthogroups_2024-Update
Sopen11g010700 No alias TCP family transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 71 151
No external refs found!