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  5. Brara.I00287.1

Brara.I00287.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00287.1
Cluster HCAA Clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
A4A49_35755 No alias putative pectate lyase p59 0.03 Orthogroups_2024-Update
MA_10430145g0030 No alias (at4g13210 : 482.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_10437227g0010 No alias (at4g24780 : 367.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Mp3g01000.1 No alias pectate lyase 0.02 Orthogroups_2024-Update
PSME_00044682-RA No alias (at1g67750 : 551.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
Potri.001G007400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Sopen06g028130 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006479 protein methylation IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 147 329
No external refs found!