Brara.I00335.1

Description : pectin methylesterase

Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.I00335.1
Cluster	HCAA Clusters: Cluster_379

Target	Alias	Description	ECC score	Gene Family Method
A4A49_00880	No alias	pectinesterase qrt1	0.03	Orthogroups_2024-Update
At2g21610	No alias	Pectinesterase 11 [Source:UniProtKB/TrEMBL;Acc:A0A1P8AZ45]	0.03	Orthogroups_2024-Update
Bradi1g21810	No alias	Pectin lyase-like superfamily protein	0.02	Orthogroups_2024-Update
Brara.B00244.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Brara.I05452.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Brara.J01617.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Brara.J02514.1	No alias	pectin methylesterase	0.04	Orthogroups_2024-Update
Glyma.01G068100	No alias	Pectin lyase-like superfamily protein	0.02	Orthogroups_2024-Update
Glyma.02G299300	No alias	Pectin lyase-like superfamily protein	0.04	Orthogroups_2024-Update
Glyma.13G060900	No alias	pectin methylesterase 31	0.03	Orthogroups_2024-Update
LOC_Os01g19440	No alias	pectinesterase, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g12410	No alias	pectinesterase, putative, expressed	0.03	Orthogroups_2024-Update
MA_10428625g0010	No alias	(at3g29090 : 374.0) Encodes an atypical pectin...	0.03	Orthogroups_2024-Update
MA_6149868g0010	No alias	(at2g36710 : 275.0) Pectin lyase-like superfamily...	0.04	Orthogroups_2024-Update
MA_99816g0010	No alias	(at2g36710 : 325.0) Pectin lyase-like superfamily...	0.03	Orthogroups_2024-Update
Mp2g01420.1	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Mp2g19430.1	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Mp3g01170.1	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
PSME_00020050-RA	No alias	(at2g21610 : 321.0) pectinesterase 11 (PE11); FUNCTIONS...	0.02	Orthogroups_2024-Update
PSME_00034460-RA	No alias	(at5g19730 : 230.0) Pectin lyase-like superfamily...	0.02	Orthogroups_2024-Update
Potri.001G364200	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Potri.004G033700	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Potri.006G120100	No alias	Pectin lyase-like superfamily protein	0.04	Orthogroups_2024-Update
Potri.006G137100	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Potri.017G054700	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Pp1s23_141V6	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Sobic.008G131300.1	No alias	pectin methylesterase	0.04	Orthogroups_2024-Update
Solyc09g091730	No alias	Pectinesterase (AHRD V3.3 *** K4CWJ9_SOLLC)	0.03	Orthogroups_2024-Update
Sopen12g003480	No alias	Pectinesterase	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	16Dec
BP	GO:0042545	cell wall modification	IEA	16Dec
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Predicted GO
BP	GO:0001932	regulation of protein phosphorylation	IEP	Predicted GO
MF	GO:0003682	chromatin binding	IEP	Predicted GO
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0003917	DNA topoisomerase type I activity	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
BP	GO:0006996	organelle organization	IEP	Predicted GO
BP	GO:0007029	endoplasmic reticulum organization	IEP	Predicted GO
BP	GO:0008037	cell recognition	IEP	Predicted GO
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Predicted GO
MF	GO:0019900	kinase binding	IEP	Predicted GO
MF	GO:0019901	protein kinase binding	IEP	Predicted GO
BP	GO:0022414	reproductive process	IEP	Predicted GO
BP	GO:0031399	regulation of protein modification process	IEP	Predicted GO
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0042325	regulation of phosphorylation	IEP	Predicted GO
BP	GO:0043549	regulation of kinase activity	IEP	Predicted GO
BP	GO:0045859	regulation of protein kinase activity	IEP	Predicted GO
BP	GO:0048544	recognition of pollen	IEP	Predicted GO
BP	GO:0050790	regulation of catalytic activity	IEP	Predicted GO
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Predicted GO
BP	GO:0051246	regulation of protein metabolic process	IEP	Predicted GO
BP	GO:0051338	regulation of transferase activity	IEP	Predicted GO
BP	GO:0051726	regulation of cell cycle	IEP	Predicted GO
BP	GO:0065009	regulation of molecular function	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Predicted GO
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	10	296

External Links

No external refs found!

Brara.I00335.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation