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  5. Brara.I00410.1

Brara.I00410.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00410.1
Cluster HCAA Clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
407495 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_07909 No alias putative pectate lyase 13 0.03 Orthogroups_2024-Update
A4A49_08453 No alias putative pectate lyase 5 0.04 Orthogroups_2024-Update
A4A49_12542 No alias pectate lyase 0.04 Orthogroups_2024-Update
A4A49_24630 No alias putative pectate lyase 3 0.04 Orthogroups_2024-Update
A4A49_26358 No alias putative pectate lyase p18 0.04 Orthogroups_2024-Update
A4A49_31246 No alias putative pectate lyase 12 0.03 Orthogroups_2024-Update
A4A49_35525 No alias putative pectate lyase 16 0.03 Orthogroups_2024-Update
A4A49_35755 No alias putative pectate lyase p59 0.05 Orthogroups_2024-Update
A4A49_40716 No alias putative pectate lyase 16 0.03 Orthogroups_2024-Update
At3g53190 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8] 0.03 Orthogroups_2024-Update
Brara.H00489.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.05G114000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G145900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G175300 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G255900 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
LOC_Os10g31910 No alias pectate lyase precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10426822g0020 No alias (at1g67750 : 481.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
Mp3g01000.1 No alias pectate lyase 0.02 Orthogroups_2024-Update
PSME_00005706-RA No alias (at3g07010 : 518.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00005709-RA No alias (at3g07010 : 494.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00014422-RA No alias (at4g24780 : 543.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00019558-RA No alias (at4g13710 : 625.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00020782-RA No alias (at5g63180 : 492.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00041064-RA No alias (at1g67750 : 595.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
Potri.001G052300 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.015G087800 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s67_160V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s84_82V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Sobic.004G091000.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sobic.010G034200.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0005986 sucrose biosynthetic process IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0019203 carbohydrate phosphatase activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
MF GO:0050307 sucrose-phosphate phosphatase activity IEP Predicted GO
MF GO:0050308 sugar-phosphatase activity IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 152 333
No external refs found!