1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I00439.1

Brara.I00439.1


Description : scaffold component *(Nop58) of snoRNP rRNA methylation complex


Gene families : OG_42_0003373 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003373_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00439.1
Cluster HCAA Clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
146841 No alias NOP56-like pre RNA processing ribonucleoprotein 0.09 Orthogroups_2024-Update
A4A49_01090 No alias putative nucleolar protein 5-2 0.03 Orthogroups_2024-Update
At3g05060 No alias Probable nucleolar protein 5-2... 0.09 Orthogroups_2024-Update
Bradi1g18440 No alias NOP56-like pre RNA processing ribonucleoprotein 0.14 Orthogroups_2024-Update
Bradi1g62430 No alias NOP56-like pre RNA processing ribonucleoprotein 0.09 Orthogroups_2024-Update
Cre10.g441400 No alias NOP56-like pre RNA processing ribonucleoprotein 0.06 Orthogroups_2024-Update
GRMZM2G124576 No alias NOP56-like pre RNA processing ribonucleoprotein 0.07 Orthogroups_2024-Update
GRMZM2G125148 No alias NOP56-like pre RNA processing ribonucleoprotein 0.06 Orthogroups_2024-Update
Glyma.11G114300 No alias NOP56-like pre RNA processing ribonucleoprotein 0.04 Orthogroups_2024-Update
Glyma.12G040200 No alias NOP56-like pre RNA processing ribonucleoprotein 0.05 Orthogroups_2024-Update
HORVU2Hr1G020690.6 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.1 Orthogroups_2024-Update
Kfl00291_0060 kfl00291_0060_v1.... (at3g05060 : 613.0) SAR DNA-binding protein, putative,... 0.08 Orthogroups_2024-Update
LOC_Os03g22730 No alias nucleolar protein NOP5-1, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.05 Orthogroups_2024-Update
PSME_00000450-RA No alias (at3g05060 : 688.0) SAR DNA-binding protein, putative,... 0.01 Orthogroups_2024-Update
Potri.005G045600 No alias NOP56-like pre RNA processing ribonucleoprotein 0.04 Orthogroups_2024-Update
Pp1s11_243V6 No alias nucleolar protein expressed 0.05 Orthogroups_2024-Update
Pp1s22_229V6 No alias nucleolar protein expressed 0.05 Orthogroups_2024-Update
Seita.9G404600.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.13 Orthogroups_2024-Update
Seita.9G404700.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.1 Orthogroups_2024-Update
Sobic.001G372800.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.07 Orthogroups_2024-Update
Sobic.003G407800.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.14 Orthogroups_2024-Update
Solyc05g055880 No alias NOP56-like pre RNA processing ribonucleoprotein (AHRD... 0.05 Orthogroups_2024-Update
Solyc09g083080 No alias MAR-binding protein 0.15 Orthogroups_2024-Update
Sopen09g031960 No alias Putative snoRNA binding domain 0.09 Orthogroups_2024-Update
evm.model.contig_496.10 No alias (at5g27120 : 425.0) SAR DNA-binding protein, putative,... 0.04 Orthogroups_2024-Update
evm.model.tig00021350.31 No alias (at3g05060 : 530.0) SAR DNA-binding protein, putative,... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002687 Nop_dom 166 394
IPR012974 NOP5_N 2 66
No external refs found!