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  5. Brara.I00515.1

Brara.I00515.1


Description : Unknown function


Gene families : OG_42_0000413 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000413_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00515.1
Cluster HCAA Clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
At1g55030 No alias RNI-like superfamily protein [Source:TAIR;Acc:AT1G55030] 0.03 Orthogroups_2024-Update
At4g00160 No alias F-box/FBD/LRR-repeat protein At4g00160... 0.03 Orthogroups_2024-Update
At4g15060 No alias CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596),... 0.03 Orthogroups_2024-Update
At5g50270 No alias Putative FBD-associated F-box protein At5g50270... 0.05 Orthogroups_2024-Update
Brara.F03244.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I02632.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I03751.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.13G325500 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
BP GO:0002376 immune system process IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006955 immune response IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0045087 innate immune response IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR013101 Leu-rich_rpt_2 112 135
No external refs found!