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  5. Brara.I00599.1

Brara.I00599.1


Description : component *(uS17) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002289_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00599.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
268639 No alias Nucleic acid-binding, OB-fold-like protein 0.04 Orthogroups_2024-Update
A4A49_60485 No alias 40s ribosomal protein s11 0.06 Orthogroups_2024-Update
Bradi3g48600 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
Bradi5g21630 No alias Nucleic acid-binding, OB-fold-like protein 0.08 Orthogroups_2024-Update
Brara.F02607.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Cre12.g514500 No alias Nucleic acid-binding, OB-fold-like protein 0.05 Orthogroups_2024-Update
GRMZM2G019325 No alias ribosomal protein S11-beta 0.08 Orthogroups_2024-Update
GRMZM2G044800 No alias ribosomal protein S11-beta 0.06 Orthogroups_2024-Update
Glyma.09G094200 No alias ribosomal protein S11-beta 0.03 Orthogroups_2024-Update
Glyma.17G105900 No alias ribosomal protein S11-beta 0.03 Orthogroups_2024-Update
HORVU2Hr1G099230.8 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
HORVU6Hr1G056610.7 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
MA_19350g0010 No alias (at3g48930 : 247.0) embryo defective 1080 (EMB1080);... 0.08 Orthogroups_2024-Update
Mp6g10500.1 No alias component RPS11 of SSU proteome 0.03 Orthogroups_2024-Update
Potri.002G140400 No alias ribosomal protein S11-beta 0.03 Orthogroups_2024-Update
Potri.014G053300 No alias ribosomal protein S11-beta 0.03 Orthogroups_2024-Update
Potri.018G115400 No alias ribosomal protein S11-beta 0.03 Orthogroups_2024-Update
Pp1s21_269V6 No alias 40s ribosomal protein s11 0.09 Orthogroups_2024-Update
Pp1s30_89V6 No alias 40s ribosomal protein s11 0.03 Orthogroups_2024-Update
Pp1s51_307V6 No alias 40s ribosomal protein s11 0.02 Orthogroups_2024-Update
Pp1s79_58V6 No alias 40s ribosomal protein s11 0.04 Orthogroups_2024-Update
Seita.1G231100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Seita.7G157100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Seita.7G234800.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Sobic.004G213200.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Sobic.006G138100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Sobic.006G213000.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Solyc06g073790 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.06 Orthogroups_2024-Update
Solyc06g073800 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.09 Orthogroups_2024-Update
Solyc12g042080 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.05 Orthogroups_2024-Update
Sopen06g030190 No alias Ribosomal protein S17 0.05 Orthogroups_2024-Update
Sopen12g021180 No alias Ribosomal protein S17 0.06 Orthogroups_2024-Update
evm.model.contig_3727.5 No alias (at4g30800 : 197.0) Nucleic acid-binding, OB-fold-like... 0.1 Orthogroups_2024-Update
evm.model.tig00000551.22 No alias (p17093|rs11_soybn : 211.0) 40S ribosomal protein S11 -... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 74 142
IPR032440 Ribosomal_S11_N 4 72
No external refs found!