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  5. Brara.I00655.1

Brara.I00655.1


Description : Unknown function


Gene families : OG_42_0005742 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005742_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00655.1
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Bradi2g03790 No alias rRNA processing protein-related 0.03 Orthogroups_2024-Update
Cre13.g587000 No alias rRNA processing protein-related 0.04 Orthogroups_2024-Update
Kfl00148_0040 kfl00148_0040_v1.1 (at5g61330 : 143.0) rRNA processing protein-related;... 0.04 Orthogroups_2024-Update
Solyc01g090470 No alias Protein AATF (AHRD V3.3 *** W9SMH5_9ROSA) 0.03 Orthogroups_2024-Update
evm.model.contig_567.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
InterPro domains Description Start Stop
IPR025160 AATF 112 244
IPR012617 AATF_C 323 398
No external refs found!