1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I00725.1

Brara.I00725.1


Description : AS2/LOB-type transcription factor


Gene families : OG_42_0000073 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00725.1
Cluster HCAA Clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
A4A49_03191 No alias lob domain-containing protein 15 0.04 Orthogroups_2024-Update
A4A49_25203 No alias lob domain-containing protein 11 0.03 Orthogroups_2024-Update
At2g30130 No alias PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1] 0.03 Orthogroups_2024-Update
At2g40470 No alias LOB domain-containing protein 15... 0.05 Orthogroups_2024-Update
At3g26620 No alias LOB domain-containing protein 23... 0.04 Orthogroups_2024-Update
At3g27650 No alias LOB domain-containing protein 25... 0.05 Orthogroups_2024-Update
At5g15060 No alias LOB domain-containing protein 34... 0.06 Orthogroups_2024-Update
Bradi1g65760 No alias LOB domain-containing protein 1 0.03 Orthogroups_2024-Update
Bradi4g44850 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Orthogroups_2024-Update
Brara.C02074.1 No alias AS2/LOB-type transcription factor 0.04 Orthogroups_2024-Update
Brara.C02407.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D02463.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E00171.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E01292.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G01214.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G092517 No alias LOB domain-containing protein 13 0.03 Orthogroups_2024-Update
GRMZM2G145568 No alias LOB domain-containing protein 11 0.02 Orthogroups_2024-Update
GRMZM2G154320 No alias ASYMMETRIC LEAVES 2-like 1 0.03 Orthogroups_2024-Update
GRMZM2G447176 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Glyma.02G234600 No alias LOB domain-containing protein 13 0.05 Orthogroups_2024-Update
Glyma.04G106400 No alias ASYMMETRIC LEAVES 2-like 1 0.04 Orthogroups_2024-Update
Glyma.11G232667 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Glyma.13G349700 No alias LOB domain-containing protein 22 0.06 Orthogroups_2024-Update
Glyma.14G021100 No alias LOB domain-containing protein 24 0.03 Orthogroups_2024-Update
Glyma.14G202300 No alias LOB domain-containing protein 13 0.04 Orthogroups_2024-Update
Glyma.15G045200 No alias LOB domain-containing protein 11 0.05 Orthogroups_2024-Update
Glyma.17G086300 No alias Lateral organ boundaries (LOB) domain family protein 0.04 Orthogroups_2024-Update
Glyma.18G024400 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Glyma.19G004900 No alias LOB domain-containing protein 25 0.03 Orthogroups_2024-Update
HORVU4Hr1G084750.2 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os05g07270 No alias DUF260 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_16891g0020 No alias (at5g63090 : 162.0) Involved in lateral organ... 0.02 Orthogroups_2024-Update
MA_84752g0010 No alias (at2g40470 : 201.0) LOB domain-containing protein 15... 0.03 Orthogroups_2024-Update
MA_9412105g0010 No alias (at2g40470 : 200.0) LOB domain-containing protein 15... 0.03 Orthogroups_2024-Update
MA_9924708g0010 No alias (at1g31320 : 131.0) LOB domain-containing protein 4... 0.03 Orthogroups_2024-Update
Mp5g11460.1 No alias transcription factor (AS2/LOB) 0.02 Orthogroups_2024-Update
PSME_00022332-RA No alias (at2g40470 : 197.0) LOB domain-containing protein 15... 0.05 Orthogroups_2024-Update
PSME_00022409-RA No alias (at1g07900 : 148.0) LOB domain-containing protein 1... 0.04 Orthogroups_2024-Update
PSME_00039447-RA No alias (at2g28500 : 163.0) LOB domain-containing protein 11... 0.01 Orthogroups_2024-Update
PSME_00043149-RA No alias (at1g07900 : 141.0) LOB domain-containing protein 1... 0.03 Orthogroups_2024-Update
PSME_00044524-RA No alias (at1g31320 : 197.0) LOB domain-containing protein 4... 0.04 Orthogroups_2024-Update
PSME_00045603-RA No alias (at2g40470 : 164.0) LOB domain-containing protein 15... 0.03 Orthogroups_2024-Update
PSME_00048626-RA No alias (at1g07900 : 148.0) LOB domain-containing protein 1... 0.05 Orthogroups_2024-Update
PSME_00056008-RA No alias (at2g30130 : 185.0) Overexpression/activation tagged... 0.03 Orthogroups_2024-Update
Potri.010G177100 No alias Lateral organ boundaries (LOB) domain family protein 0.04 Orthogroups_2024-Update
Potri.010G217700 No alias LOB domain-containing protein 1 0.03 Orthogroups_2024-Update
Potri.013G081200 No alias LOB domain-containing protein 15 0.03 Orthogroups_2024-Update
Pp1s73_7V6 No alias lob domain-containing 0.02 Orthogroups_2024-Update
Sobic.008G005000.1 No alias AS2/LOB-type transcription factor 0.01 Orthogroups_2024-Update
Solyc01g109240 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc06g050950 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc06g064540 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen02g016910 No alias Protein of unknown function DUF260 0.03 Orthogroups_2024-Update
Sopen02g018580 No alias Protein of unknown function DUF260 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
MF GO:0008200 ion channel inhibitor activity IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009611 response to wounding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016247 channel regulator activity IEP Predicted GO
MF GO:0016248 channel inhibitor activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0017080 sodium channel regulator activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019871 sodium channel inhibitor activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0099106 ion channel regulator activity IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 12 109
No external refs found!