1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I00732.1

Brara.I00732.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00732.1
Cluster HCAA Clusters: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.04 Orthogroups_2024-Update
At3g07010 No alias Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8] 0.03 Orthogroups_2024-Update
Brara.F02217.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
LOC_Os06g38520 No alias pectate lyase family protein, expressed 0.02 Orthogroups_2024-Update
PSME_00009672-RA No alias (at5g48900 : 608.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.008G032700 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Solyc02g087670 No alias Pectate lyase (AHRD V3.3 *** K4BBS3_SOLLC) 0.02 Orthogroups_2024-Update
Sopen03g030810 No alias Pectate lyase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
MF GO:0051499 D-aminoacyl-tRNA deacylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 186 343
No external refs found!