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  5. Brara.I00815.1

Brara.I00815.1


Description : histone *(H3)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00815.1
Cluster HCAA Clusters: Cluster_338

Target Alias Description ECC score Gene Family Method Actions
438193 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
A4A49_56508 No alias histone h3.2 0.03 Orthogroups_2024-Update
A4A49_57080 No alias histone h3.2 0.03 Orthogroups_2024-Update
A4A49_61103 No alias histone h3.2 0.04 Orthogroups_2024-Update
At3g27360 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
Brara.B00354.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.B03430.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.D00649.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.H02834.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Brara.I01745.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Cre06.g265250 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g267950 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274850 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g276600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g276850 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g504650 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g504800 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506300 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506500 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre16.g661450 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g709050 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G158526 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G130900 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G055200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Kfl00053_0050 kfl00053_0050_v1.1 (p08437|h3_volca : 147.0) Histone H3 - Volvox carteri &... 0.01 Orthogroups_2024-Update
LOC_Os05g41080 No alias histone H3, putative, expressed 0.02 Orthogroups_2024-Update
MA_153387g0010 No alias (at5g65360 : 137.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
MA_56411g0010 No alias (at5g65360 : 262.0) Histone superfamily protein;... 0.04 Orthogroups_2024-Update
MA_74555g0010 No alias (at5g65360 : 127.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
Sobic.006G081800.1 No alias histone *(H3) 0.06 Orthogroups_2024-Update
Solyc01g074000 No alias Histone H3 (AHRD V3.3 *** A0A0E0P928_ORYRU) 0.03 Orthogroups_2024-Update
Solyc01g079110 No alias Histone H3 (AHRD V3.3 *** A0A0V0H170_SOLCH) 0.03 Orthogroups_2024-Update
Solyc01g080600 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.03 Orthogroups_2024-Update
Solyc02g077480 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.03 Orthogroups_2024-Update
Solyc04g074580 No alias Histone H3 (AHRD V3.3 *** K7VSQ3_MAIZE) 0.03 Orthogroups_2024-Update
Solyc05g051500 No alias WEB family protein, chloroplastic (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Solyc10g008910 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.03 Orthogroups_2024-Update
Solyc12g056540 No alias Histone H3 (AHRD V3.3 *** K4DFY5_SOLLC) 0.04 Orthogroups_2024-Update
Sopen01g030620 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen01g030790 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen01g032420 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen01g033540 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen01g033790 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen01g033830 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen02g022390 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen10g004700 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen12g029140 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
evm.model.contig_2059.6 No alias (at5g10980 : 218.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
evm.model.contig_2255.2 No alias (at5g10980 : 218.0) Histone superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003896 DNA primase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0032392 DNA geometric change IEP Predicted GO
BP GO:0032508 DNA duplex unwinding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!