1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I00890.1

Brara.I00890.1


Description : HD-ZIP I/II-type transcription factor


Gene families : OG_42_0000105 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000105_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00890.1
Cluster HCAA Clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
A4A49_24322 No alias homeobox-leucine zipper protein athb-13 0.03 Orthogroups_2024-Update
A4A49_36238 No alias homeobox-leucine zipper protein hat5 0.03 Orthogroups_2024-Update
At2g22430 No alias Homeobox-leucine zipper protein ATHB-6... 0.03 Orthogroups_2024-Update
Bradi1g73190 No alias Homeobox-leucine zipper protein family 0.03 Orthogroups_2024-Update
Brara.E00112.1 No alias HD-ZIP I/II-type transcription factor 0.04 Orthogroups_2024-Update
Brara.E03658.1 No alias HD-ZIP I/II-type transcription factor 0.04 Orthogroups_2024-Update
Brara.I04272.1 No alias HD-ZIP I/II-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.06G234700 No alias homeobox protein 52 0.03 Orthogroups_2024-Update
Glyma.18G126800 No alias homeobox 1 0.03 Orthogroups_2024-Update
HORVU6Hr1G072810.6 No alias HD-ZIP I/II-type transcription factor 0.03 Orthogroups_2024-Update
Pp1s31_96V6 No alias dna-binding protein 0.03 Orthogroups_2024-Update
Pp1s57_194V6 No alias No description available 0.02 Orthogroups_2024-Update
Solyc03g113270 No alias LEVAHOX1G L.esculentum homeobox 0.02 Orthogroups_2024-Update
Sopen01g040080 No alias Homeobox domain 0.03 Orthogroups_2024-Update
Sopen03g006900 No alias Homeobox domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 67 120
No external refs found!