Brara.I00979.1

Description : RING-H2-class CTL-subclass E3 ubiquitin ligase

Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.I00979.1
Cluster	HCAA Clusters: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
Brara.G03241.1	No alias	RING-H2-class CTL-subclass E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Glyma.06G234300	No alias	RING/U-box superfamily protein	0.03	Orthogroups_2024-Update
Glyma.12G158500	No alias	RING/U-box superfamily protein	0.03	Orthogroups_2024-Update
Pp1s254_59V6	No alias	zinc finger (c3hc4-type ring finger) family protein	0.03	Orthogroups_2024-Update
Solyc10g007140	No alias	RING/U-box superfamily protein (AHRD V3.3 *** AT1G53190.2)	0.04	Orthogroups_2024-Update
Sopen01g050120	No alias	hypothetical protein	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Predicted GO
CC	GO:0000786	nucleosome	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
MF	GO:0019786	Atg8-specific protease activity	IEP	Predicted GO
BP	GO:0032200	telomere organization	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0060249	anatomical structure homeostasis	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	553	594

External Links

No external refs found!