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  5. Brara.I00996.1

Brara.I00996.1


Description : protein factor (NERD) of non-canonical RdDM pathway


Gene families : OG_42_0000694 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000694_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00996.1
Cluster HCAA Clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
A4A49_21461 No alias zinc finger ccch domain-containing protein 44 0.03 Orthogroups_2024-Update
GRMZM2G703918 No alias nucleic acid binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
Sobic.003G379900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G142000.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003169 GYF 1407 1447
IPR000571 Znf_CCCH 1852 1875
IPR003121 SWIB_MDM2_domain 935 993
IPR004343 Plus-3_dom 1059 1161
No external refs found!