Brara.I01080.1

Description : transcription factor *(A/B-GATA)

Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.I01080.1
Cluster	HCAA Clusters: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
A4A49_15410	No alias	gata transcription factor 12	0.03	Orthogroups_2024-Update
Brara.A00502.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Brara.B03483.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Brara.C04334.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Brara.K00334.1	No alias	transcription factor *(A/B-GATA)	0.04	Orthogroups_2024-Update
GRMZM2G324131	No alias	GATA transcription factor 12	0.04	Orthogroups_2024-Update
Glyma.02G056600	No alias	GATA type zinc finger transcription factor family protein	0.04	Orthogroups_2024-Update
Glyma.02G073900	No alias	GATA transcription factor 4	0.03	Orthogroups_2024-Update
Glyma.08G187300	No alias	GATA transcription factor 29	0.03	Orthogroups_2024-Update
HORVU6Hr1G039720.5	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
LOC_Os01g47360	No alias	GATA zinc finger domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g50270	No alias	GATA zinc finger domain containing protein, expressed	0.02	Orthogroups_2024-Update
PSME_00001982-RA	No alias	(at5g25830 : 153.0) Encodes a member of the GATA factor...	0.03	Orthogroups_2024-Update
PSME_00028192-RA	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
Potri.004G161500	No alias	GATA transcription factor 5	0.04	Orthogroups_2024-Update
Potri.008G038900	No alias	GATA transcription factor 9	0.03	Orthogroups_2024-Update
Potri.008G213900	No alias	GATA transcription factor 15	0.02	Orthogroups_2024-Update
Potri.014G124400	No alias	GATA transcription factor 16	0.04	Orthogroups_2024-Update
Sopen01g036490	No alias	GATA zinc finger	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Predicted GO
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Predicted GO
BP	GO:0000160	phosphorelay signal transduction system	IEP	Predicted GO
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Predicted GO
MF	GO:0004112	cyclic-nucleotide phosphodiesterase activity	IEP	Predicted GO
MF	GO:0004427	inorganic diphosphatase activity	IEP	Predicted GO
MF	GO:0004673	protein histidine kinase activity	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Predicted GO
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
BP	GO:0009250	glucan biosynthetic process	IEP	Predicted GO
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predicted GO
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0035556	intracellular signal transduction	IEP	Predicted GO
CC	GO:0044459	plasma membrane part	IEP	Predicted GO
BP	GO:0051273	beta-glucan metabolic process	IEP	Predicted GO
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Predicted GO
CC	GO:0098797	plasma membrane protein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	90	124

External Links

No external refs found!

Brara.I01080.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation