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  5. Brara.I01316.1

Brara.I01316.1


Description : component *(uS6c) of small plastid ribosomal-subunit proteome


Gene families : OG_42_0007385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007385_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01316.1
Cluster HCAA Clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
A4A49_12743 No alias 30s ribosomal protein s6 alpha, chloroplastic 0.05 Orthogroups_2024-Update
Bradi1g02030 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.05 Orthogroups_2024-Update
Cre12.g520600 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.08 Orthogroups_2024-Update
GRMZM2G118005 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.03 Orthogroups_2024-Update
Glyma.05G218800 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.04 Orthogroups_2024-Update
HORVU5Hr1G120250.1 No alias component *(uS6c) of small plastid ribosomal-subunit proteome 0.12 Orthogroups_2024-Update
Kfl00077_0230 kfl00077_0230_v1.1 (p82403|rr6_spiol : 125.0) 30S ribosomal protein S6... 0.05 Orthogroups_2024-Update
LOC_Os03g62630 No alias ribosomal protein S6, putative, expressed 0.03 Orthogroups_2024-Update
Mp4g07210.1 No alias component psRPS6 of small ribosomal subunit proteome 0.04 Orthogroups_2024-Update
Potri.001G088300 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.05 Orthogroups_2024-Update
Pp1s24_129V6 No alias ribosomal protein s6 0.03 Orthogroups_2024-Update
Pp1s359_29V6 No alias ribosomal protein s6 0.05 Orthogroups_2024-Update
Seita.9G016600.1 No alias component *(uS6c) of small plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Sobic.001G017000.1 No alias component *(uS6c) of small plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Solyc08g082690 No alias Ribosomal protein S6 (AHRD V3.3 *** A0A103XFW4_CYNCS) 0.06 Orthogroups_2024-Update
Sopen08g030910 No alias Ribosomal protein S6 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
MF GO:0019843 rRNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0042586 peptide deformylase activity IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000529 Ribosomal_S6 1 95
No external refs found!