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  5. Brara.I01459.1

Brara.I01459.1


Description : KNOX-type transcription factor


Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01459.1
Cluster HCAA Clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
A4A49_11478 No alias homeobox protein knotted-1-like 6 0.04 Orthogroups_2024-Update
A4A49_16490 No alias homeobox protein knotted-1-like 1 0.01 Orthogroups_2024-Update
A4A49_16694 No alias homeotic protein knotted-1 0.04 Orthogroups_2024-Update
A4A49_22921 No alias homeobox protein knotted-1-like let6 0.03 Orthogroups_2024-Update
A4A49_37821 No alias homeobox protein knotted-1-like let12 0.03 Orthogroups_2024-Update
At1g70510 No alias KNOTTED-like from Arabidopsis thaliana 2... 0.02 Orthogroups_2024-Update
Brara.C02557.1 No alias KNOX-type transcription factor 0.04 Orthogroups_2024-Update
Brara.F02723.1 No alias KNOX-type transcription factor 0.04 Orthogroups_2024-Update
Brara.I01203.1 No alias KNOX-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G017087 No alias KNOTTED-like from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
GRMZM2G452178 No alias KNOTTED-like from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
Glyma.04G049500 No alias KNOTTED-like from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
Glyma.04G064100 No alias KNOTTED1-like homeobox gene 3 0.03 Orthogroups_2024-Update
Glyma.04G185100 No alias KNOTTED1-like homeobox gene 6 0.05 Orthogroups_2024-Update
Glyma.15G257800 No alias KNOTTED1-like homeobox gene 6 0.03 Orthogroups_2024-Update
LOC_Os01g19694 No alias Homeobox domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g03164 No alias homeobox protein knotted-1, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g47016 No alias homeobox protein knotted-1-like 10, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os03g51710 No alias homeobox protein knotted-1, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g03884 No alias homeobox protein knotted-1-like 6, putative, expressed 0.03 Orthogroups_2024-Update
MA_10428500g0010 No alias (o04136|knap3_maldo : 399.0) Homeobox protein... 0.03 Orthogroups_2024-Update
PSME_00033425-RA No alias (o04135|knap2_maldo : 176.0) Homeobox protein... 0.03 Orthogroups_2024-Update
PSME_00035379-RA No alias (o04135|knap2_maldo : 179.0) Homeobox protein... 0.02 Orthogroups_2024-Update
PSME_00035381-RA No alias (p46609|osh1_orysa : 118.0) Homeobox protein OSH1 -... 0.04 Orthogroups_2024-Update
Potri.005G017200 No alias KNOTTED1-like homeobox gene 6 0.03 Orthogroups_2024-Update
Potri.011G011100 No alias KNOX/ELK homeobox transcription factor 0.03 Orthogroups_2024-Update
Potri.012G087100 No alias KNOTTED1-like homeobox gene 6 0.03 Orthogroups_2024-Update
Sobic.001G106000.2 No alias KNOX-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G106200.1 No alias KNOX-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G023900.1 No alias KNOX-type transcription factor 0.04 Orthogroups_2024-Update
Solyc02g081120 No alias class 1 knotted-like homeodomain protein 0.03 Orthogroups_2024-Update
Solyc05g005090 No alias Knotted-1 homeobox protein (AHRD V3.3 *** R9R650_9FABA) 0.04 Orthogroups_2024-Update
Sopen12g005430 No alias KNOX2 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
MF GO:0008200 ion channel inhibitor activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009611 response to wounding IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016247 channel regulator activity IEP Predicted GO
MF GO:0016248 channel inhibitor activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0017080 sodium channel regulator activity IEP Predicted GO
MF GO:0019871 sodium channel inhibitor activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
MF GO:0099106 ion channel regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 302 341
IPR005541 KNOX2 174 219
IPR005540 KNOX1 121 159
IPR005539 ELK_dom 262 283
No external refs found!